snakemake_examples/exercise0/Snakefile @ dafa07df
| dafa07df | chloe.quignot | rule mafft:
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input:
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| 1e5111ea | chloe.quignot | "fusionFasta/allSequences.fasta",
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| dafa07df | chloe.quignot | output:
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| 1e5111ea | chloe.quignot | "mafft/mafft_res.fasta",
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| dafa07df | chloe.quignot | shell:
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"""
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mafft {input} > {output}
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"""
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| 1e5111ea | chloe.quignot | ||
rule loadData:
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| dafa07df | chloe.quignot | output:
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"fasta/P01325.fasta", "fasta/P01308.fasta",
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| 1e5111ea | chloe.quignot | params:
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dirFasta = "fasta",
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shell:
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"""
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| dafa07df | chloe.quignot | wget --directory-prefix {params.dirFasta} https://www.uniprot.org/uniprot/P01325.fasta
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wget --directory-prefix {params.dirFasta} https://www.uniprot.org/uniprot/P01308.fasta
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| 1e5111ea | chloe.quignot | """
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rule fusionFasta:
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input:
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| dafa07df | chloe.quignot | p1="fasta/P01325.fasta",
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p2="fasta/P01308.fasta",
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| 1e5111ea | chloe.quignot | output:
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"fusionFasta/allSequences.fasta",
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shell:
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"""
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| dafa07df | chloe.quignot | cat {input.p1} {input.p2} > {output}
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| 1e5111ea | chloe.quignot | """
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