commit dafa07dff183984176a510af20b03f8404bfcccf
Author: chloe.quignot <chloe.quignot@node06.example.org>
Date:   Thu Jun 13 14:46:50 2024 +0200

    simplification de Claire

diff --git a/exercise0/Snakefile b/exercise0/Snakefile
index 9dc30cb..3f16c74 100644
--- a/exercise0/Snakefile
+++ b/exercise0/Snakefile
@@ -1,52 +1,34 @@
-samples=["P01325", "P01308"]
-
-rule targets:
-    input:
-        expand("fasta/{sample}.fasta", sample=samples),
+rule mafft:
+    input: 
         "fusionFasta/allSequences.fasta",
+    output:
         "mafft/mafft_res.fasta",
+    shell:
+        """
+            mafft {input} > {output} 
+        """
 
 
 rule loadData:
-    output:
-        "fasta/{sample}.fasta",
-    log:
-        stdout = "logs/{sample}_wget.stdout",
-        stderr = "logs/{sample}_wget.stderr",
+    output: 
+         "fasta/P01325.fasta", "fasta/P01308.fasta",
     params:
         dirFasta = "fasta",
-    threads: 1 
     shell:
         """
-          wget --output-file {log.stderr} \
-               --directory-prefix {params.dirFasta} \
-               https://www.uniprot.org/uniprot/{wildcards.sample}.fasta > {log.stdout}
+          wget --directory-prefix {params.dirFasta} https://www.uniprot.org/uniprot/P01325.fasta
+          wget --directory-prefix {params.dirFasta} https://www.uniprot.org/uniprot/P01308.fasta
         """
 
 
 rule fusionFasta:
     input:
-        expand("fasta/{sample}.fasta", sample=samples),
+        p1="fasta/P01325.fasta", 
+        p2="fasta/P01308.fasta",
     output:
         "fusionFasta/allSequences.fasta",
-    log:
-        "logs/fusionData.stderr",
-    threads: 1
     shell:
         """
-            cat {input} > {output} 2> {log}
+            cat {input.p1} {input.p2} > {output}
         """
 
-
-rule mafft:
-    input: 
-        rules.fusionFasta.output,
-    output:
-        "mafft/mafft_res.fasta",
-    log:
-        "logs/whichMafft.txt",
-    threads: 1
-    shell:
-        """
-            mafft {input} > {output} 2> {log}
-        """